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The 990 read · EIN 91-2155317 · WA · Fiscal year 2024

Allen Institute

Allen Institute: CEO salary, finances and where donations go

In its own words

“The mission of the Allen Institute is to unlock the complexities of bioscience and advance our knowledge to improve human health. Using an open science, multi-scale, team-oriented approach.”

Data only Figures straight from the filing, screened by our rules. Not yet reviewed in depth by a CPA.

Methodology by Amir Arani, CPA, CA · Updated

Top pay
$1.2M Rui Costa, 0.5% of spending
Revenue
$272.1M 97.4% from donations and grants
Spent
$270.7M 80.5% on programs, as reported
Net assets
$203.7M end of 2024
Savings
9.0 months of spending, net assets ÷ spending
People
1,058 employees, 11 volunteers
Form 990 (2024), Parts I, VII, IX, X
01 · Red flags

2 things to look at.

We screen every filing against twelve rules. A flag is a prompt for a closer look, not a finding of wrongdoing.

high

Reported a significant diversion of assets

The charity answered yes to Part VI line 5 and explained on Schedule O.

Form 990 Part VI, line 5 + Schedule O
medium

Loans to or from officers, directors or key employees

Part IV line 26 answered yes.

Form 990 Part IV, line 26; Schedule L Part II
02 · Where $1 goes · 2024

Of each dollar it spent, 80.5¢ went to programs, as reported.

The split the charity filed.
80.5¢
Programs, $217.8M
0.0¢
Fundraising, $0K
19.5¢
Admin, $52.9M
Form 990 (2024), Part IX, line 25
Cost to raise $1
0¢
as reported

For each dollar donated, Allen Institute spent 0¢ on fundraising.

Fundraising ÷ $264.9M contributions · Form 990 Parts VIII, IX
03 · The savings

Net assets: $164.1M to $203.7M in 11 years.

Net assets at each fiscal year end, 2013 to 2024.

Net assets at year end, $ millions
164
171
216
427
345
263
207
139
174
179
202
204
Form 990 history via ProPublicaForm 990 (2024)
04 · Who gets paid

The 8 highest-paid people.

Reportable pay in 2024, from the charity and related organizations.

Rui Costa
President
$1,229,107
Ananda Goldrath
Executive Vp, Dir. Allen I
$599,239
Hongkui Zeng
Executive Vp, Dir. Brain Science
$598,964
Marjorie Thomas
Vp, Treasurer, CFO
$598,200
Andrew Hickl
Chief Technology Officer
$558,044
Karel Svoboda
Executive Vp, Dir. Neural Dynamics
$556,227
Christopher Beaudoin
Vice President, COO
$554,507
Margaret Mcclellan
Vice President, Secretary
$540,369
Form 990 (2024), Part VII, Section A
Largest outside contractors
ContractorServicePaid
General Datatech LpIt service maintenance$737,838
Neville BrodyBrand and communications$433,333
Deloitte Consulting LlpOperational landscape analysis$260,935
Lewis-Burke Associate LLCLobbying & advocacy$256,066
Thomas BraunSoftware development$188,603
Form 990 (2024), Part VII, Section B
05 · Questions

The questions people ask about the Allen Institute.

Short, sourced answers. Each one stands on its own.

How much does the Allen Institute CEO make?

Rui Costa, President, received $1,229,107 in reportable compensation in 2024, 0.5% of Allen Institute's $270.7M in spending.

Form 990 (2024), Part VII

What percentage of Allen Institute donations go to programs?

Allen Institute reported 80.5% of 2024 spending as programs, 0% as fundraising and 19.5% as management.

Form 990 (2024), Part IX

How much money does Allen Institute have?

Net assets were $203.7M at the end of 2024, about 9.0 months of spending.

Form 990 (2024), Part X

Does Allen Institute have any red flags in its filing?

Its latest Form 990 triggered 2 of our twelve screening rules: reported a significant diversion of assets; loans to or from officers, directors or key employees. A flag is a prompt for a closer look, not a finding of wrongdoing.

Form 990 (2024)
06 · Sources and citing

Every number, traced.

  1. Allen Institute Form 990, 2024 (IRS e-file)
  2. Allen Institute Form 990 history (ProPublica Nonprofit Explorer)
Cite this page

Amir Arani, “Allen Institute: CEO salary, finances and where your dollar goes,” Charity Math, updated 2026-11-07. https://charitymath.com/charities/allen-institute/